As the leaves turn golden and the air crisps with the scent of autumn, my kitchen transforms into a cozy haven filled with the warm spices of season. This is the time I look forward to making my delightful Healthy Pumpkin Morning Glory Muffins. These muffins are the ultimate breakfast treat, melding the heartiness of shredded carrots and apples with the earthy sweetness of pumpkin. Not only are they a healthier choice for those on the go, but they also bring a satisfying comfort that’s perfect for crisp mornings. With the added crunch of pecans and a hint of cozy spices, they pair beautifully with a cup of coffee or warm tea. Are you ready to fill your home with the comforting aroma of fall and treat yourself to a deliciously nourishing start to your day?
Why Make Pumpkin Morning Glory Muffins?
Deliciously hearty and healthy, these muffins are packed with nutrients. Moisture from pumpkin and apples ensures each bite melts in your mouth. Spiced with warm flavors, they capture the essence of fall perfectly. Versatile enough for breakfast or a snack, they also freeze well for enjoying later. If you love muffin recipes, be sure to check out my Pumpkin Streusel Muffins and Oatmeal Apple Breakfast for more delicious ideas!
Pumpkin Morning Glory Muffin Ingredients
These ingredients combine to create a wonderfully moist and nutritious muffin that celebrates the flavors of fall!
For the Batter
- Whole Wheat Flour – Provides structure and fiber; substitute with all-purpose flour for a lighter texture.
- All-Purpose Flour – Lightens the texture; can be replaced with more whole wheat flour for added health benefits.
- Light Brown Sugar – Adds sweetness and moisture; brown sugar can be swapped with coconut sugar for a refined-sugar-free option.
- Baking Powder – Helps the muffins rise; ensure it is fresh for best results.
- Baking Soda – Works with the acidic ingredients for leavening.
- Pumpkin Spice – Infuses autumn flavors into the muffins; use a mix of cinnamon and nutmeg as a substitute if unavailable.
- Cinnamon – Enhances the warm spice profile of the muffins.
- Salt – Balances sweetness and enhances flavor.
- Pumpkin Puree – Adds moisture and pumpkin flavor; ensure it’s not pumpkin pie filling.
- Unsweetened Apple Sauce – Adds moisture and reduces the need for oil.
- Coconut Oil – Provides richness and moisture; can be replaced with vegetable oil.
- Shredded Apple – Introduces natural sweetness and moisture; any type of apple can be used.
- Vanilla Extract – Enhances overall flavor; can be omitted if desired.
- Grated Carrot – Adds sweetness and texture; substitute with zucchini for a different flavor profile.
For the Mix-Ins
- Dried Cranberries – Introduce a sweet tanginess; substitute with raisins or chopped dates.
- Flaked Coconut – Adds chewiness and flavor; can be omitted for a nut-free version.
- Pecans – Provide a crunchy texture; swap with walnuts or exclude for nut allergies.
With these ingredients at hand, you are well on your way to creating wholesome Pumpkin Morning Glory Muffins that are not only delightful but also nourishing!
Step‑by‑Step Instructions for Pumpkin Morning Glory Muffins
Step 1: Preheat the Oven and Prepare the Muffin Tin
Begin by preheating your oven to 400°F (204°C). While the oven heats, line a 12-cup muffin tin with paper liners, ensuring they fit snugly. This will keep your healthy Pumpkin Morning Glory Muffins from sticking and make cleanup easier. Set the prepared tin aside while you mix the batter.
Step 2: Whisk Dry Ingredients
In a medium-sized mixing bowl, whisk together the whole wheat flour, all-purpose flour, light brown sugar, baking powder, baking soda, pumpkin spice, cinnamon, and salt. Make sure everything is well combined, allowing the dry ingredients to blend evenly. This step is crucial for ensuring your muffins rise beautifully and have a uniform texture.
Step 3: Mix Wet Ingredients
In a large mixing bowl, combine the pumpkin puree, unsweetened apple sauce, melted coconut oil, shredded apple, vanilla extract, and grated carrot. Mix thoroughly until the components are well incorporated and smooth. This mixture will bring moisture to your Pumpkin Morning Glory Muffins, so ensure no clumps remain for the best results.
Step 4: Combine Dry and Wet Ingredients
Gently fold the dry ingredients into the wet mixture using a spatula. Be careful not to overmix; you want the batter just combined with some lumps remaining for tender muffins. This step is essential to achieve the perfect consistency that keeps your muffins fluffy and moist.
Step 5: Add Mix-Ins
Next, gently fold in the dried cranberries, flaked coconut, and pecans until they are evenly distributed throughout the batter. This adds delicious texture and flavor to your Pumpkin Morning Glory Muffins. Mix just until combined to maintain that light, fluffy muffin texture.
Step 6: Fill the Muffin Cups
Using a spoon or an ice cream scoop, evenly divide the muffin batter among the prepared muffin cups, filling each about three-quarters full. This ensures they have room to rise without overflowing. Smooth the tops slightly for an even bake and a nice presentation.
Step 7: Bake the Muffins
Place the muffin tin in the preheated oven and bake for 24 to 28 minutes. You’ll know they’re done when a toothpick inserted into the center comes out clean, with only a few crumbs attached. Enjoy the warm, inviting aroma of pumpkin and spices filling your home as they bake!
Step 8: Cool and Serve
Allow the muffins to cool in the pan for about 10 minutes, which helps prevent them from sticking to the liners. Then, transfer the muffins to a wire rack to cool completely. These delightful Pumpkin Morning Glory Muffins are perfect warm or at room temperature—enjoy them as a nourishing start to your day!
Variations & Substitutions for Pumpkin Morning Glory Muffins
Feel free to get creative and make these muffins your own—there are so many delicious possibilities!
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Banana Bliss: Replace pumpkin puree with an equal amount of mashed bananas for a fruity twist. The natural sweetness and moisture will turn your muffins into a delightful banana treat.
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Gluten-Free Goodness: Use a gluten-free flour blend instead of the combination of whole wheat and all-purpose flours. This way, everyone can enjoy a scrumptious muffin without the worry of gluten!
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Nut-Free Delight: Omit nuts altogether or substitute with sunflower seeds to keep the crunch while catering to nut allergies. This makes the muffins accessible for anyone, ensuring everyone can join in on the enjoyment.
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Extra Fruity: Add fresh blueberries or chopped pears in place of the dried cranberries for a burst of juiciness. The combination of flavors brings a refreshing delight that pairs beautifully with the spices.
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Hearty Oats: Stir in a half cup of rolled oats into the batter for added texture and heartiness. This will create a more filling muffin, perfect for an on-the-go breakfast or snack.
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Spicy Kick: Boost the flavor by adding a pinch of cayenne pepper or a dash of ginger to the spice mix. It will add an intriguing layer of warmth that dances on your palate.
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Rich Chocolate: For a decadent twist, fold in mini chocolate chips instead of dried fruit or nuts. This sweet addition will make these muffins a little indulgence, especially wonderful alongside a cup of coffee.
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Coconut Cream: Substitute some of the pumpkin puree with coconut cream for a tropical flair. The creaminess of coconut paired with pumpkin will transport you to a cozy beach in autumn!
With these variations, your Pumpkin Morning Glory Muffins can be uniquely yours each time you bake! And if you’re looking for more muffin inspiration, be sure to check out my Pumpkin Streusel Muffins and Spinat Feta Muffins for delightful alternatives.
What to Serve with Pumpkin Morning Glory Muffins?
As the aroma of these delightful muffins fills your home, it’s the perfect time to consider a few complementing dishes that round out your breakfast experience.
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Creamy Greek Yogurt: A dollop of creamy Greek yogurt balances the sweetness of the muffins, adding a rich and tangy flavor. Pair it with a drizzle of honey for an extra touch of indulgence.
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Fresh Fruit Salad: A vibrant fruit salad made with fall favorites like apples, pears, and pomegranate seeds brings a refreshing crunch to your plate. The natural sweetness of fruit enhances the earthy flavors of the muffins.
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Maple Pecan Oatmeal: Warm, hearty oatmeal with a drizzle of maple syrup and a sprinkle of pecans creates a comforting breakfast spread. This option keeps you satisfied and complements the muffins’ nutty elements.
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Spiced Chai Tea: The warm, aromatic spices of chai tea echo the flavors found in the muffins, making it a perfect pairing. Sip on this cozy beverage as you enjoy your muffin and feel the autumn vibes.
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Cinnamon Hot Cocoa: For a sweet treat, serve these muffins alongside a mug of homemade cinnamon hot cocoa. The rich, chocolaty warmth creates a delightful contrast to the muffins’ spices, making your breakfast feel indulgently festive.
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Pumpkin Spice Smoothie: Blend pumpkin puree with banana, cinnamon, and yogurt for a creamy smoothie that aligns perfectly with the muffin’s flavors. This drink adds a lovely, nutritious element to your meal.
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Nutty Granola Parfait: Layer granola, yogurt, and sliced bananas for a satisfying parfait. The crunchy textures compliment the muffin’s softness, making each bite an exciting contrast in flavors.
How to Store and Freeze Pumpkin Morning Glory Muffins
Room Temperature: Keep muffins in an airtight container for up to 3 days. This keeps them moist and delicious, perfect for enjoying with your morning coffee.
Fridge: If you prefer, you can store the muffins in the fridge for a slightly longer shelf life, up to 5 days. Just be sure to wrap them well to avoid drying out.
Freezer: Freeze muffins individually wrapped in plastic wrap and then placed in a freezer-safe bag for up to 2 months. Thaw at room temperature or microwave briefly before serving.
Reheating: For the best experience, reheat frozen muffins in a toaster oven or microwave until warm. This revives their freshness and brings back that cozy fall flavor!
Expert Tips for Pumpkin Morning Glory Muffins
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Fresh Ingredients: Ensure your baking powder and baking soda are fresh to achieve the best rise for your muffins.
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Gentle Mixing: Avoid overmixing the batter; mix until just combined for tender and fluffy Pumpkin Morning Glory Muffins. Overmixing can result in dense muffins.
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Cool Before Serving: Allow muffins to cool in the pan for a few minutes before transferring them to a wire rack to prevent sticking and maintain their shape.
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Customizable Add-ins: Feel free to substitute cranberries with raisins or various nuts; just keep in mind any allergies when mixing in your favorite ingredients.
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Proper Storage: Store your muffins in an airtight container for up to 3 days at room temperature; they also freeze well if you’re batch preparing.
Make Ahead Options
These Pumpkin Morning Glory Muffins are perfect for busy home cooks looking to save time during the week! You can prepare the dry ingredients (whole wheat flour, all-purpose flour, and spices) and store them in an airtight container for up to 3 days. Additionally, the muffin batter can be mixed and refrigerated overnight, ensuring all those delightful flavors meld together before baking. When you’re ready to bake, simply take the batter out of the fridge and fill your muffin cups as usual. For optimal freshness and texture, bake them directly from the refrigerator, adding an extra 2-3 minutes to the baking time if needed. With these make-ahead options, you’ll enjoy homemade Pumpkin Morning Glory Muffins without the fuss during your busy mornings!
Pumpkin Morning Glory Muffins Recipe FAQs
How do I select ripe pumpkins for my muffins?
Absolutely! When choosing pumpkin puree, look for canned pumpkin labeled simply as “pumpkin” without added spices or sugars. If you opt for fresh pumpkin, select a medium-sized pumpkin that feels heavy for its size and has a firm skin. Avoid any with soft spots or blemishes.
What’s the best way to store leftover muffins?
I recommend storing your Pumpkin Morning Glory Muffins in an airtight container at room temperature for up to 3 days. If you prefer them chilled, they can be kept in the fridge for about 5 days. Just ensure they’re well-wrapped to maintain moisture—no one wants a dry muffin!
Can I freeze these muffins, and how should I do it?
Yes, you can! To freeze your Pumpkin Morning Glory Muffins, let them cool completely, then wrap each muffin in plastic wrap. Place the wrapped muffins in a freezer-safe bag or container for up to 2 months. When you’re ready to enjoy, thaw at room temperature or microwave individually for about 20-30 seconds—perfect for a quick breakfast!
How can I troubleshoot if my muffins come out dense?
Very good question! Dense muffins can result from overmixing the batter, which toughens the gluten. To prevent this, mix until just combined—lumps are okay! Additionally, ensure your baking powder and baking soda are fresh. You can test baking powder by adding a teaspoon to warm water; if it bubbles, it’s good to use!
Are there any dietary considerations I should be aware of?
Absolutely! When making these Pumpkin Morning Glory Muffins, consider any nut allergies if you’re including pecans or coconut. For a nut-free version, simply omit these add-ins and enjoy the same delightful flavors. If you’re watching sugar intake, you can replace brown sugar with coconut sugar for a healthier alternative!
Can I substitute the pumpkin in the muffins?
Yes! If you want to mix things up, mashed bananas or sweet potatoes can be great alternatives to pumpkin. Both substitutions will provide moisture and a hint of natural sweetness, keeping the muffins delightful and fluffy. Just adjust the spices to match your chosen ingredient for the best flavor!

Deliciously Healthy Pumpkin Morning Glory Muffins for Fall Mornings
Ingredients
Equipment
Method
- Preheat your oven to 400°F (204°C) and line a 12-cup muffin tin with paper liners.
- Whisk together the whole wheat flour, all-purpose flour, light brown sugar, baking powder, baking soda, pumpkin spice, cinnamon, and salt in a medium bowl.
- In a large bowl, combine the pumpkin puree, unsweetened apple sauce, melted coconut oil, shredded apple, vanilla extract, and grated carrot, mixing thoroughly.
- Gently fold the dry ingredients into the wet ingredients with a spatula until just combined with some lumps remaining.
- Fold in the dried cranberries, flaked coconut, and pecans until evenly distributed.
- Spoon the batter into the muffin cups, filling each about three-quarters full.
- Bake for 24 to 28 minutes or until a toothpick comes out clean.
- Cool in the pan for 10 minutes before transferring to a wire rack.
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